GENETIC DIVERSITY OF DOMESTIC REINDEER BY MARKERS OF TWO TYPES
Rubrics: BIOLOGY
Abstract and keywords
Abstract (English):
Abstract. The purpose of the study was to evaluate and compare the genetic diversity of populations of domestic reindeer by hereditary polymorphism of proteins and ISSR DNA fragments. Methodology and methods. The polymorphism of proteins and enzymes was studied by electrophoresis in starch and polyacrylamide gels. Polymorphism of ISSR DNA fragments was studied by the standard method of flanking by inverted repetition of microsatellite loci of DNA sites. Data processing and plotting were performed using standard computer programs Gclstats, Genepop, Exsel. Results. According to the transferrin locus (Tf), nine alleles were identified in the deer of the Little-Earth and Big-Earth tundra. Island Kolguev and mainland Chukchi deer have five and seven alleles, respectively. According to the allelic diversity of hepatic esterase (Est-P3) and ISSR DNA fragments, the examined populations did not differ. Judging by the values of the Shannon indices and effective elements, the level of genetic diversity of the Chukchi mainland tundra and Kolguev Island populations was lower than that of the Eastern European tundra mainland populations. Relative to the reindeer of the mainland tundra of Eastern Europe, the Chukchi mainland and Kolguev island populations diverged in opposite directions according to the frequencies of 10 out of 11 ISSR DNA fragments, Est-P3 alleles, as well as rare Tf alleles. Comparison of estimates of genetic diversity by different types of markers in the examined populations using Shannon indices and effective elements gave ambiguous results. Scientific novelty. According to the level of genetic diversity in the time interval of 40–50 years, similar trends in the divergence of the mainland Chukchi and island Kolguev populations relative to the mainland populations of the Little and Big-Earth tundra of Eastern Europe were revealed.

Keywords:
alleles, frequency, transferrins, hepatic esterase, ISSR fragments, genetic diversity, differentiation
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References

1. Braend M. Polymorphism in the serum proteins of the reindeer // Nature. 1964. Vol. 203. No. 4945. p. 674. DOI:https://doi.org/10.1038/203674a0.

2. Shubin P. N. Genetika transferrinov severnogo olenya i evropeyskogo losya // Genetika. 1969. T. 5. № 1. S. 37-41.

3. Shubin P. N., Efimceva E. A. Biohimicheskaya i populyacionnaya genetika severnogo olenya. Leningrad: Nauka, 1988. 103 s.

4. Shubin P. N., Ionova T. A. Identifikaciya 13 alleley Tf-lokusa u severnogo olenya (Rangifer tarandus L.) // Citologiya i genetika. 1983. T. 25. № 3. S. 60-62.

5. Shubin P. N., Matyukov V. S. Geneticheskaya differenciaciya populyaciya severnyh oleney // Genetika. 1982. T. 18. № 12. S. 2030-2036.

6. Kol N. V., Korolev A. L., Zaharov I. A. Polimorfizm mitohondrial'noy DNK v tuvinskoy populyacii severnogo olenya (Rangifer tarandus L.) // Genetika. 2006. T. 42. № 1. S. 110-112. EDN: https://elibrary.ru/HTEFYF

7. Kol N. V., Lazebnyy O. E. Polimorfizm ISSR-PCR markerov v tuvinskoy populyacii severnogo olenya (Rangifer tarandus L.) // Genetika. 2006. T. 42. № 12. S. 1731-1734. EDN: https://elibrary.ru/IASUDP

8. Harzinova V. R., Deniskova T. E., Sermyagin A. A., Docev A. V., Solov'eva A. D., Zinov'eva N. A. Evolyuciya metodov ocenki bioraznoobraziya severnogo olenya (Rangifer tarandus) // Sel'skohozyaystvennaya biologiya. 2017. T. 52. № 6. S. 1083-1093. DOI:https://doi.org/10.15389/agrobiology.2017.6.1083rus. EDN: https://elibrary.ru/YLSUZR

9. Korolev A. N., Mamontov V. N., Holodova M. V., Baranova A. I. [i dr.] Polimorfizm kontrol'nogo regiona mtDNK severnyh oleney (Ranifer tarandus) materikovoy chasti Evropeyskogo Severo-Vostoka // Zoologicheskiy zhurnal. 2017. T. 96. № 1. S. 106-118. DOI: https://doi.org/10.7868/S0044513417010147; EDN: https://elibrary.ru/XRBUNF

10. Rozhkov Yu. I., Davydov A. V., Morgunov N. A., Osipov K. I. [i dr.] Geneticheskaya differenciaciya severnogo olenya Rangifer tarandus L. po prostranstvu Evrazii v svyazi s osobennostyami ego deleniya na podvidy // Krolikovodstvo i zverovodstvo. 2020. № 2. S. 23-36. DOI:https://doi.org/10.24411/0023-4885-2020-10203. DOI: https://doi.org/10.24411/0023-4885-2020-00007; EDN: https://elibrary.ru/QNCCTX

11. Stolpovskiy Yu. A., Babayan O. V., Kashtanov S. N., Piskunov A. K. [i dr.] Geneticheskaya ocenka porod severnogo olenya (Rangifer tarandus) i ih dikogo predka s pomosch'yu novoy paneli STR-markerov // Genetika. 2020. T. 56. № 12. S. 1410-1416. DOI:https://doi.org/10.31857/S0016675820120139. EDN: https://elibrary.ru/YCPKAN

12. Zhai J.-C., Liu W.-S., Yin Y.-J. et al. Analysis on genetic diversity of reindeer (Rangifer tarandus) in the Greater Khingan Mountains using microsatellite markers [e-resource] // Zoological Studies. 2017. Vol. 56. DOI:https://doi.org/10.6620/ZS.2017.56-11. URL: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6517736 (date of reference: 27.08.2022). EDN: https://elibrary.ru/YEUEXW

13. Anderson D. G., Kvie K. S., Davydov V. N., Røed K. H. Maintaining genetic integrity of coexisting wild and domestic populations: Genetic differentiation between wild and domestic Rangifer with long traditions of intentional interbreeding [e-resource] // Ecology and Evolution. 2017. Vol. 7. No. 17. Pp. 6790-6802. DOI:https://doi.org/10.1002/ece3.3230. URL: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5587498 (date of reference: 27.08.2022). EDN: https://elibrary.ru/XOSXCX

14. Ju Y., Liu H., Rong M. et al. Genetic diversity and population genetic structure of the only population of Aoluguya Reindeer (Rangifer tarandus) in China // Mitochondrial DNA. Part A. 2019. Vol. 30. No. 1. Pp. 24-29. DOI:https://doi.org/10.1080/24701394.2018.1448081. EDN: https://elibrary.ru/TJMTHZ

15. Romanenko T. M., Kalashnikova L. A., Filippova G. I., Layshev K. A. Geneticheskaya struktura populyacii severnyh oleney o. Kolguev Neneckogo avtonomnogo okruga // Dostizheniya nauki i tehniki APK. 2014. № 4. S. 68-70. EDN: https://elibrary.ru/SCMETT

16. Romanenko T. M., Filippova G. I. Geneticheskiy polimorfizm v populyacii domashnego severnogo olenya Kanino-Timanskoy tundry Neneckogo AO // Mezhdunarodnyy nauchnyy zhurnal «Simvol nauki». 2015. № 11. S. 44-52.

17. Bryzgalov G. Ya. Geneticheskaya harakteristika populyaciy severnyh oleney razlichnyh geograficheskih rayonov Chukotskogo avtonomnogo okruga // Teoreticheskie i prikladnye problemy APK. 2019. № 3. S. 43-49. DOI: https://doi.org/10.32935/2221-7312-2019-41-3-42-48; EDN: https://elibrary.ru/STMOMJ

18. Bryzgalov G. Ya. Geneticheskaya struktura populyacii severnyh oleney Magadanskoy oblasti // Dal'nevostochnyy agrarnyy vestnik. 2018. № 3. S. 47-50. DOI: https://doi.org/10.24411/1999-6837-2018-13058; EDN: https://elibrary.ru/YOYPSP

19. Bryzgalov G. Ya., Ignatovich L. S. Podhod k ocenke svyazi mikrosatellitnyh lokusov genomnoy DNK i produktivnyh kachestv severnyh oleney chukotskoy porody // Genetika i razvedenie zhivotnyh. 2020. № 3. S. 12-19. DOI:https://doi.org/10.31043/2410-2733-2020-3-12-19. EDN: https://elibrary.ru/DGNNAT

20. Røed K. H., Bjørklund I., Olsen B. J. From wild to domestic reindeer - Genetic vidence of a non-native origin of reindeer pastoralism in northern Fennoscandia [e-resource] // Journal of Archaeological Science: Reports. 2018. Vol. 19. No. 8. Pp. 279-286. DOI:https://doi.org/10.1016/j.jasrep.2018.02.048. URL: https://www.sciencedirect.com/science/article/pii/S2352409X2030482X (date of reference: 27.08.2022). EDN: https://elibrary.ru/PEHJJF

21. Knut H. Røed, Kjersti S. Kvie and Bård-jørgen bårdsen. genetic structure and origin of semi-domesticated reindeer // In book: Reindeer Husbandry and Global Environmental Change: Pastoralism in Fennoscand. Edited By Tim Horstkotte, Øystein Holand, Jouko Kumpula, Jon Moen. London & New York. Swedish University of Agricultural Sciences (SLU). 2022. Pp. 46-60. DOI:https://doi.org/10.4324/9781003118565-4.

22. Zietkiewicz E., Rafalski A., Labuda D. Genome Fingerprinting by Simple Sequence Repeat (SSR)-Anchored Polymerase Chain Reaction Amplification [e-resource] // Genomics. 1994. Vol. 20. No. 2. Pp. 176--183. DOI:https://doi.org/10.1006/geno.1994.1151.

23. Zhivotovskiy L. A. Statisticheskie metody analiza chastot genov v prirodnyh populyaciyah // Itogi nauki i tehniki: Obschaya genetika. 1983. № 6. S. 76-104.

24. Rokickiy P. F. Vvedenie v statisticheskuyu genetiku. Minsk: Vysshaya shkola, 1978. 416 s.

25. Rozenberg G. S. Informacionnyy indeks i raznoobrazie: Bol'cman, Kotel'nikov, Shennon, Uiver… // Problemy regional'noy i global'noy ekologii. 2010. T. 19. № 2. S. 4-25. EDN: https://elibrary.ru/QCVWET

26. Kuznecov V. M. Informacionno-entropiynyy podhod k analizu geneticheskogo raznoobraziya populyaciy (analiticheskiy obzor) // Agrarnaya nauka Evro-Severo-Vostoka. 2022. T. 23. № 2. S. 159-173. DOI:https://doi.org/10.30766/2072-9081.2022.23.2.159-173. EDN: https://elibrary.ru/LSSUYZ

27. Pomishin S. B. Proishozhdenie olenevodstva i domestikaciya severnogo olenya. Moskva: Nauka, 1990. 141 s.

28. Neneckoe olenevodstvo: geografiya, etnografiya, lingvistika / Pod red. D. V. Arayutova, M. D. Lyublinskoy. Sankt-Peterburg: MAE RAN. (Seriya «Kunstkamera - Arhiv». T. VIII). 2018. 184 s.

29. Dobrotvorskiy I. M. Zootehnicheskaya harakteristika olenevodstva na ostrove Kolguev // Trudy NII Polyarnogo zemledeliya, zhivotnovodstva i promyslovogo hozyaystva. Ser. Olenevodstvo. 1938. Vyp. 2. S. 163-221.

30. Syroechkovskiy E. E. Severnyy olen'. Moskva: Agropromizdat, 1986. 256 s.

31. Matyukov V. S., Shubin P. N., Efimceva E. A. [i dr.] Ekologo-geneticheskie aspekty razvedeniya severnyh oleney v Rossii // Agrarnaya nauka - sel'skohozyaystvennomu proizvodstvu Severa: sbornik nauchnyh trudov Arhangel'sk, 2009. S. 100-106.

32. Strandén I., Kantanen J., Russo I. M., Orozco-terWengel P., Bruford M.W. Genomic selection strategies for breeding adaptation and production in dairy cattle under climate change. Climgen Consortium [e-resource] // Heredity (Edinb). 2019. Vol. 123. No. 3. Pp. 307-317. DOI:https://doi.org/10.1038/s41437-019-0207-1. URL: https://www.nature.com/articles/s41437-019-0207-1 (date of reference: 07.04.2021).

33. Kantanen J., Løvendahl P., Strandberg E., Eythorsdottir E., Li M. H., Kettunen-Præbel A., Berg P., Meuwissen T. Utilization of farm animal genetic resources in a changing agro-ecological environment in the Nordic countries // Frontiers in Genetics. 2015. Vol. 6. No. 52. Pp. 1-9. DOI:https://doi.org/10.3389/fgene.2015.00052. EDN: https://elibrary.ru/UQLOFX

34. Amaral A. J., Pavão A. L., Gama L. T. Animals (Basel). 2020. Vol. 10. No. 6. Pp. 1089-1109. DOI:https://doi.org/10.3390/ani10061089. EDN: https://elibrary.ru/YBLECV

35. Pelletier M., Kotiaho S., Salmi A.-K. Identifying early stages of reindeer domestication in the archaeological record: a 3D morphological investigation on forelimb bones of modern populations from Fennoscandia [e-resource] // Environmental Science Archaeological and Anthropological Sciences. 2020. Vol. 62. No. 6. Pp. 303-328. DOI:https://doi.org/10.1007/s12520-020-01123-0. EDN: https://elibrary.ru/XOELIC

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